bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-19_CDS_annotation_glimmer3.pl_2_3

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  har:HEAR1942  mannose-sensitive agglutinin (MSHA) biogenesis pr...  32.0    8.1
  ttr:Tter_1187  homocysteine S-methyltransferase                     32.0    9.8


> har:HEAR1942  mannose-sensitive agglutinin (MSHA) biogenesis 
protein MshI
Length=219

 Score = 32.0 bits (71),  Expect = 8.1, Method: Compositional matrix adjust.
 Identities = 21/57 (37%), Positives = 30/57 (53%), Gaps = 19/57 (33%)

Query  13   EKDLRLEADNLYRKIETQYKLIKKISD---KEE--------------AHKIIDRIWI  52
            EKD+RLEA    R+ E Q K ++++SD   K E              AH+IID +W+
Sbjct  55   EKDMRLEAR--LRRAEAQVKSLQQVSDVLRKGELGNTDGYADYLRAFAHQIIDGVWL  109


> ttr:Tter_1187  homocysteine S-methyltransferase
Length=629

 Score = 32.0 bits (71),  Expect = 9.8, Method: Composition-based stats.
 Identities = 15/43 (35%), Positives = 25/43 (58%), Gaps = 2/43 (5%)

Query  10   DQTEKDLRLEADNLYRKIETQYKLI--KKISDKEEAHKIIDRI  50
            D T KD+  + D +++KIE    LI  + + D E+  K +DR+
Sbjct  480  DPTAKDIEFQIDRMWQKIEAGAHLIMSQPLYDVEDLQKFLDRV  522



Lambda      K        H        a         alpha
   0.317    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125472237464