bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-17_CDS_annotation_glimmer3.pl_2_2

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  eus:EUTSA_v10028852mg  hypothetical protein                         35.4    0.66
  lpi:LBPG_04123  DNA topoisomerase                                   32.7    7.1
  lpr:LBP_p4g017  traI; DNA topoisomerase                             32.7    7.3
  lpr:LBP_p3g031  traI; DNA topoisomerase                             32.3    7.7
  pce:PECL_2037  DNA topoisomerase                                    32.3    7.7
  lcz:LCAZH_p024  trsI; protein TrsI, topoisomerase 1A-like protein   32.3    9.6


> eus:EUTSA_v10028852mg  hypothetical protein
Length=295

 Score = 35.4 bits (80),  Expect = 0.66, Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (48%), Gaps = 10/61 (16%)

Query  19   YRMFKRYHAFKMK-NEQEITG---------WKIDMNGCVLKEYLIRKKGGQIRLRLTKDN  68
            Y  + R+ A K+  +E  + G         W + MN C    Y   ++GG IR+ L K+N
Sbjct  217  YDFYSRFFAPKLGVDEDPVCGSAHCALAHYWSLKMNKCDFLAYQASRRGGTIRIHLDKEN  276

Query  69   Q  69
            Q
Sbjct  277  Q  277


> lpi:LBPG_04123  DNA topoisomerase
Length=711

 Score = 32.7 bits (73),  Expect = 7.1, Method: Compositional matrix adjust.
 Identities = 15/35 (43%), Positives = 21/35 (60%), Gaps = 0/35 (0%)

Query  23   KRYHAFKMKNEQEITGWKIDMNGCVLKEYLIRKKG  57
            K Y A+K    ++I+ W I MNG  L   L+R+KG
Sbjct  158  KDYLAYKEAQTRQISDWLIGMNGSPLYTLLLRQKG  192


> lpr:LBP_p4g017  traI; DNA topoisomerase
Length=711

 Score = 32.7 bits (73),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 15/35 (43%), Positives = 21/35 (60%), Gaps = 0/35 (0%)

Query  23   KRYHAFKMKNEQEITGWKIDMNGCVLKEYLIRKKG  57
            K Y A+K    ++I+ W I MNG  L   L+R+KG
Sbjct  158  KDYLAYKEAQTRQISDWLIGMNGSPLYTLLLRQKG  192


> lpr:LBP_p3g031  traI; DNA topoisomerase
Length=655

 Score = 32.3 bits (72),  Expect = 7.7, Method: Compositional matrix adjust.
 Identities = 15/35 (43%), Positives = 21/35 (60%), Gaps = 0/35 (0%)

Query  23   KRYHAFKMKNEQEITGWKIDMNGCVLKEYLIRKKG  57
            K Y A+K    ++I+ W I MNG  L   L+R+KG
Sbjct  158  KDYLAYKEAQTRQISDWLIGMNGSPLYTLLLRQKG  192


> pce:PECL_2037  DNA topoisomerase
Length=711

 Score = 32.3 bits (72),  Expect = 7.7, Method: Compositional matrix adjust.
 Identities = 15/35 (43%), Positives = 21/35 (60%), Gaps = 0/35 (0%)

Query  23   KRYHAFKMKNEQEITGWKIDMNGCVLKEYLIRKKG  57
            K Y A+K    ++I+ W I MNG  L   L+R+KG
Sbjct  158  KDYLAYKEAQTRQISDWLIGMNGSPLYTLLLRQKG  192


> lcz:LCAZH_p024  trsI; protein TrsI, topoisomerase 1A-like protein
Length=711

 Score = 32.3 bits (72),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 15/35 (43%), Positives = 20/35 (57%), Gaps = 0/35 (0%)

Query  23   KRYHAFKMKNEQEITGWKIDMNGCVLKEYLIRKKG  57
            K Y A+K    ++I+ W I MNG  L   L+RK G
Sbjct  158  KDYLAYKEAQTRQISDWLIGMNGSPLYTLLLRKNG  192



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125823653952