bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-14_CDS_annotation_glimmer3.pl_2_2
Length=107
Score E
Sequences producing significant alignments: (Bits) Value
mar:MAE_45000 hypothetical protein 37.4 0.034
sua:Saut_1235 hypothetical protein 34.3 0.64
csv:101212813 uncharacterized LOC101212813 34.3 2.9
api:100169425 CD109 antigen 33.9 4.8
lbc:LACBIDRAFT_333126 hypothetical protein 33.1 6.9
efm:M7W_2639 PTS system, N-acetylglucosamine-specific IIA, IIB... 32.7 9.9
efu:HMPREF0351_12626 nagE2; PTS system N-acetylglucosamine tra... 32.7 9.9
efc:EFAU004_02677 PTS system, N-acetylglucosamine-specific IIC... 32.7 9.9
> mar:MAE_45000 hypothetical protein
Length=55
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/49 (41%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query 20 EGETIEEKVNRVVNNNEPITDGAPIIFTEKKDGVLPEYNPRTDRWDIAL 68
GE + +K R +NN IT G IIF EK +PE++PR+ +W + L
Sbjct 7 SGEALMQKAKRRINNQFLIT-GFSIIFREK----VPEFSPRSLQWPVLL 50
> sua:Saut_1235 hypothetical protein
Length=66
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 0/48 (0%)
Query 8 SFFNRMKPCECFEGETIEEKVNRVVNNNEPITDGAPIIFTEKKDGVLP 55
+ FN KPC C TI+ K+ ++N+ P + F ++ GV P
Sbjct 13 ALFNSSKPCHCHLFFTIKSKLMVLLNHYIPRCPFYTVCFAFRRSGVHP 60
> csv:101212813 uncharacterized LOC101212813
Length=767
Score = 34.3 bits (77), Expect = 2.9, Method: Composition-based stats.
Identities = 25/94 (27%), Positives = 50/94 (53%), Gaps = 14/94 (15%)
Query 2 KTRIVPSFFNRMKPCECFEGETIEEKVNRVVNNNEPITDGAPIIFTEKKD------GVLP 55
+ + VPS+ K C F E+ + + +R+ ++ P ++GAP++ T++K G LP
Sbjct 438 RVKTVPSYH---KLCFIFGEESSDRRYSRLAHDTHP-SNGAPVLMTDEKKNNEVSAGPLP 493
Query 56 --EYNPRTDR--WDIALTAMEKMDRARKAKKEQG 85
++ P+ DR D+ L +++ + +A EQ
Sbjct 494 MIDWTPQMDRSFIDLMLEQLQEGNTFGQAFSEQA 527
> api:100169425 CD109 antigen
Length=1635
Score = 33.9 bits (76), Expect = 4.8, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 9/65 (14%)
Query 5 IVPSFFNRMKPCECFEGETIEEKVNRVVNNNEPITDGAPIIFTE--------KKDGVLPE 56
++P F N P C EGE I +V V NN + I+ ++DG++
Sbjct 862 VLPFFMNVEMPTHCKEGEQIGIRVT-VFNNQCNSVEAVVILLGSESYKFVHVEEDGIVNS 920
Query 57 YNPRT 61
YNPRT
Sbjct 921 YNPRT 925
> lbc:LACBIDRAFT_333126 hypothetical protein
Length=285
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/75 (27%), Positives = 37/75 (49%), Gaps = 8/75 (11%)
Query 14 KPCECFEGETIEEKVNRVVNNNEPITDGAPIIFTEKKDGVLPEYNPRTDRWDIALTAMEK 73
KPC+ I+ K+ ++ N+ + G+ ++ G+LPE + T RW+I L
Sbjct 111 KPCDALR--KIQAKLFQIKNHEIVLLKGSDLM-----SGILPEQDSDTSRWNIPLCGSRT 163
Query 74 M-DRARKAKKEQGVK 87
M +R R++ V+
Sbjct 164 MKNRGRRSISSHIVR 178
> efm:M7W_2639 PTS system, N-acetylglucosamine-specific IIA, IIB,
IIC component
Length=652
Score = 32.7 bits (73), Expect = 9.9, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (53%), Gaps = 5/55 (9%)
Query 7 PSFFNRMKPCECFEGETIEEKVNRVVNNNE-PITDGAPIIFTEKKDG----VLPE 56
P+ N + E F GETIE+ + + N PIT+ + +F EK G VLPE
Sbjct 483 PAQTNTVVKTETFAGETIEQDIYAIANGKLIPITEVSDDVFAEKMMGDGYAVLPE 537
> efu:HMPREF0351_12626 nagE2; PTS system N-acetylglucosamine transporter
subunit IIABC (EC:2.7.1.69)
Length=652
Score = 32.7 bits (73), Expect = 9.9, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (53%), Gaps = 5/55 (9%)
Query 7 PSFFNRMKPCECFEGETIEEKVNRVVNNNE-PITDGAPIIFTEKKDG----VLPE 56
P+ N + E F GETIE+ + + N PIT+ + +F EK G VLPE
Sbjct 483 PAQTNTVVKTETFAGETIEQDIYAIANGKLIPITEVSDDVFAEKMMGDGYAVLPE 537
> efc:EFAU004_02677 PTS system, N-acetylglucosamine-specific IICBA
component (EC:2.7.1.69)
Length=652
Score = 32.7 bits (73), Expect = 9.9, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (53%), Gaps = 5/55 (9%)
Query 7 PSFFNRMKPCECFEGETIEEKVNRVVNNNE-PITDGAPIIFTEKKDG----VLPE 56
P+ N + E F GETIE+ + + N PIT+ + +F EK G VLPE
Sbjct 483 PAQTNTVVKTETFAGETIEQDIYAIANGKLIPITEVSDDVFAEKMMGDGYAVLPE 537
Lambda K H a alpha
0.313 0.134 0.396 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 125230604613