FEATURES             Location/Qualifiers
     gene            96..1367
                     /locus_tag="Alpa_01"
     CDS             96..1367
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MPSGTYHGSVLHVNKNHVNKNNIDKYTIVNPATGETFPMFLIVPCNKCALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFESAYSRLTLIESCWRRPTGEYHPDGSPVTRSIGFAYCVPVINGGINYVMKYMGKRECAPEGMNSTFMLASRKNGGIGSAYAEQLRAFYEQQPDTCDMSVINIYTGQPLTTMLPRYYRMKFMPSTSMCYDSNFIKYFKDTVRWFEIARYLHKQYKLPFKFTYPEEYLRLVRMTGKTPYYDPSKTIINDTFIKYYLPQFCSQTVYEDLYYKAFSYGLDCLSTALVFFDSSQVLKHEKSLHMNSLQQAAINARMSMREELNLKKASYDVRVKMNKHYRKEKI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:CDL65713.1"
                     /inference="similar to AA sequence:INSD:WP_005867316.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1460..1633
                     /locus_tag="Alpa_02"
     CDS             1460..1633
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MEKYIIFYHSAFGYDNVRVDAESFSDAVSIADSISSKFGATIVGVCLEVLLNNWYHE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1626..1805
                     /locus_tag="Alpa_03"
     CDS             1626..1805
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MNKYTFIFEIIWRDPKTGQFKTSEYRKKNQMSIVDARSYARRLVNIQNVLSVRFYKEMC"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1807..1971
                     /locus_tag="Alpa_04"
     CDS             1807..1971
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MYKGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLILEKL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1968..2165
                     /locus_tag="Alpa_05"
     CDS             1968..2165
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MKITPNQWIELVKLISTFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQEVDSVTIKPQF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2166..4403
                     /locus_tag="Alpa_06"
     CDS             2166..4403
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MAQNVFDATFDANNRIDVNSFDWSHVNNLTTNFGRITPVFCELVPAKGSLRINPEFGLELMPMVFPVQTRMFARLNFFKVTLRSMWEDYPDFISNFRDDLEEPYILPDKHGFERMLKTNTLGDYLGIPTQRTTFSNYSSSAINHCTPSGSSTSEGFYFVSPSLSWDDIYSQWTGTVGSVKTIGCVVSPSNEESTVFLLSNSLAIGKYTSASLSFKMTTTASFKKMPCRIIIYHTALKTKFYVDSEFALSDDNKTARLSIPLGNVAEKLGAIGSTVSEFCNMCILISNSSLNSAANAVTAQSVNVYADPELSEVDYDTYPFRTQKNDTAEHPKLLAYRFRAYESVYNAYYRDIRNNPFVVNGRPVYNKWLPTMKGGADSTLYQLHQCNWERDFLTTAVPNPQQGMNTPLVGLTIGDVVTRSEDGTLSVQKQTVLVDEDGSKYGVSYRVSEDGERLVGVDYDPVSEKTPVTAINSYAELAALAAEQSAGFTIETLRYVNAYQKFLELNMRKGFSYKQIMQGRWDIDIRFDELLMPEFIGGISRELSMRTVEQTVDQQGSSSQGQYAEALGSKTGIAGVYGNTSNNIEVFCDEESYIIGLLTVTPVPIYTQLLPKDFTYNGLLDHYQPEFDRIGFQPITYKEICPMNADNSTSSGFIERTFGYQRPWYEYVAKYDNAHGLFRTDMKNFVMHRSFTGLPQLGQQFLLVDPNAVNQVFSVTEYTDKIFGYVKFNATARLPISRVAIPRLD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65712.1"
                     /inference="similar to AA sequence:INSD:WP_024568106.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4679..5002
                     /locus_tag="Alpa_07"
     CDS             4679..5002
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MARNTKPDYKCVECNFDVQKDFERTKPNLGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDASWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQKKFGDKYINPQNN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5005..5427
                     /locus_tag="Alpa_08"
     CDS             5005..5427
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MPSPAAGAAAGAAAGSVVPGIGTAIGAIGGAAISAIGNWFGNRSNRKASREAFERESKFAREERLAQQQWIEQMYEKNNSYNSPAAQMQRLKDAGLNPDLMYSRGDVGNATAPEAPAQAPTPRYNVIPTNTYGQTAQISC"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:INSD:WP_024568108.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5435..6154
                     /locus_tag="Alpa_09"
     CDS             5435..6154
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_09"
                     /translation="LKAAQARLANSESKKTDTEESLLTADYLLRKARTESDIELNNSTIYVNHELGQLNHAEAEVAAKKLQEIDVAMSEARERISTMKAQQSQIDENMVQLKFDRYLRSKEFELLCKRTYQDMKESNSRINLNAAEVQDMMATQLARVMNLNASTYMQKKQGILASEQTMTELYKQTGIDISNQHAKFNFDQAKNWDSTERFTNVATTWINSVSFAVGQFAGATTSLQKGGFLGKSMSPIGFR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:INSD:CDL65715.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cccgctcaga tatgaacaat atatattgtg aagaccctaa agtaatatgg cacccccacg 
       61 cttctaagct gatacaaaag tatcgtacgt ttacaatgcc ctccggtaca tatcatggtt 
      121 ctgtacttca tgttaacaaa aatcatgtca ataaaaacaa tattgataaa tatacgattg 
      181 taaatcccgc tactggcgaa acatttccaa tgttcttgat tgttccctgc aacaagtgtg 
      241 ctctttgtaa cgaaaaaaaa gctcaacaat ggtcgtttcg tgctctctgt gaatcatata 
      301 cctctaataa acaagcctac tttataactc ttacttataa caatgaacat ttaccgaaaa 
      361 acggagtatt tccggaagag attcaactct tttttaagcg ccttcgtacc aaattggata 
      421 gacgtggcat ttctcataat cttcgctata ttgcagtttc tgaatatgga cactggtcta 
      481 aacgtcctca ttatcatatt atattatgga atttccctga taatttcgag tcggcatatt 
      541 cgcgccttac gctcattgaa agctgctggc gtcgtcctac tggtgagtac catcctgacg 
      601 gatcacctgt tactaggtct attggttttg cttattgtgt ccctgttatt aatggtggta 
      661 tcaattatgt catgaaatac atgggtaaac gtgagtgcgc tcctgaaggt atgaattcta 
      721 ctttcatgct tgcttcccgc aaaaatggtg gtattggttc tgcctatgct gaacaacttc 
      781 gcgcttttta tgagcaacaa cctgatacat gcgacatgtc cgttatcaat atatataccg 
      841 gtcaacctct tactactatg ctgcctcgct attatcgtat gaagtttatg ccttctactt 
      901 caatgtgtta tgactctaat tttattaagt attttaaaga cactgtgcgc tggtttgaaa 
      961 ttgctcgcta tcttcataag caatacaagc ttccgtttaa atttacttat cctgaagaat 
     1021 atcttcgact cgtccgtatg actggtaaaa ctccttatta tgatccttct aaaactatta 
     1081 taaatgatac gtttataaag tattatcttc ctcaattttg ttcacagact gtttatgagg 
     1141 atttgtatta taaagccttt agctatggtc ttgattgctt atctactgct cttgtgtttt 
     1201 tcgattcttc tcaagttctg aagcatgaaa aatctttgca tatgaattcc ttacaacaag 
     1261 ctgctattaa tgcccggatg tctatgagag aggaacttaa tcttaaaaaa gcttcttatg 
     1321 atgttcgtgt gaaaatgaat aagcattata gaaaagagaa aatttaaatt agatttaact 
     1381 attaattaac accttattaa caatagattt cctatctttg tagtgtaaga aaaagaaata 
     1441 ctaatttaat ttaattgtta tggaaaagta tattattttt tatcattctg cttttggtta 
     1501 tgacaatgtt cgtgttgatg ctgaatcttt ctcagatgct gtttctattg ctgattctat 
     1561 tagctctaaa tttggtgcta ctattgtcgg tgtatgtctt gaagttttat taaataattg 
     1621 gtatcatgaa taagtacact tttatttttg aaatcatctg gcgtgaccct aagaccggtc 
     1681 agtttaaaac tagtgaatat cgcaagaaga atcagatgtc tattgttgat gctcgttctt 
     1741 atgctcgacg tttggttaat atccaaaatg ttttatccgt tcgtttttat aaagaaatgt 
     1801 gttgatatgt ataaaggtgt tttaaagttt attaaaagag aaactcttca tgaagagttt 
     1861 gttataagta ttggtatatt taatcgtcct tcaactgccg aacgttttcg caagcaattg 
     1921 caggatgtta atgtaggtta tgatgtttta ctaattcttg aaaaattatg aaaattactc 
     1981 ctaatcagtg gatcgagctt gtaaagctta tttccacatt tattattggt gtgattactg 
     2041 ctcttacagt acagtcttgt actgcgtcta tgtctgtgtt ttggaaaaat caaaattcaa 
     2101 aacaggattc tcaacaaact acccaacaag aggtagattc agtaactatt aaaccgcaat 
     2161 tttaaatggc acaaaacgtt tttgacgcta catttgatgc taataaccgc attgatgtaa 
     2221 attcgtttga ttggtctcat gtgaataatt tgactactaa ttttggtcgc attactcctg 
     2281 tattctgtga gcttgttccc gcgaaaggtt ctcttcgtat taatccagag tttggtcttg 
     2341 agctgatgcc tatggtattc cctgttcaaa ctcgtatgtt tgcacgtctt aacttcttta 
     2401 aggtaactct tcgttctatg tgggaagact atcctgattt catctctaat ttccgtgatg 
     2461 atttggaaga accttatatt ttgcctgata agcacggctt tgaacgtatg cttaaaacta 
     2521 atactttagg tgattacctt ggtattccaa cacagagaac tactttttct aactattctt 
     2581 cttctgccat taatcattgt actccttctg gtagtagtac atctgaaggt ttctattttg 
     2641 tctctccttc cttatcttgg gatgatattt attctcagtg gaccggcact gtcggtagtg 
     2701 ttaaaactat tggttgtgtt gttagtcctt ctaatgagga atctacggtt tttctgttat 
     2761 ctaatagctt ggctataggc aaatatactt ctgcttcatt atcgtttaag atgactacca 
     2821 ctgctagttt taaaaaaatg ccttgtcgta ttattatata tcacactgca ttaaaaacta 
     2881 agttttatgt tgattctgaa tttgcgttgt ctgatgataa taaaactgct aggttaagta 
     2941 ttcctcttgg taatgttgcg gaaaagcttg gagctattgg ttctactgtg tctgagtttt 
     3001 gtaatatgtg tattttgata tctaattcta gtttgaattc tgctgctaat gctgttaccg 
     3061 cccagtcagt taatgtttac gcagatcccg agctttcgga agttgactat gatacttatc 
     3121 cgtttcggac acaaaaaaat gatactgctg aacaccctaa attgcttgct tatcgttttc 
     3181 gtgcttatga atctgtttac aacgcctatt atcgtgatat acgcaacaat ccttttgtag 
     3241 ttaacggtcg tcctgtttac aataaatggc ttccgacaat gaaaggcgga gctgactcta 
     3301 cgttatatca gcttcatcaa tgcaattggg aacgtgattt cttgaccacc gctgtaccga 
     3361 atcctcaaca aggtatgaat actcctcttg ttggtcttac cattggagat gttgttactc 
     3421 gctctgaaga tggcacgctt tctgttcaaa aacagactgt ccttgttgat gaagatggct 
     3481 ctaaatatgg tgtttcttat agagtatctg aagatggtga acgtcttgtt ggtgttgatt 
     3541 atgatcctgt atcggaaaaa acgcctgtga ctgctattaa ttcctatgct gaattggctg 
     3601 ctcttgcagc tgaacaaagt gcaggtttta ctattgagac tcttcgttat gttaatgcct 
     3661 atcaaaagtt cttagagctt aatatgcgca aagggttttc gtataaacaa attatgcaag 
     3721 gtcgttggga tattgatatc cggtttgatg agcttcttat gcctgaattt attggtggta 
     3781 tctctcgcga gttgtccatg cgtactgttg aacaaaccgt tgaccaacaa ggtagttcat 
     3841 ctcaaggaca atatgcagaa gctctcggtt ctaaaactgg tatcgctgga gtttatggta 
     3901 acacttctaa taatattgaa gtattctgtg atgaggaatc ttacattatc ggtttgctaa 
     3961 ctgtaactcc tgtgcctatt tatactcaat tgttgcctaa agattttaca tataatggtt 
     4021 tattagacca ctatcagccg gaattcgatc gtattggttt tcaacctatt acctataagg 
     4081 aaatatgccc aatgaatgct gataattcga cttcttctgg atttatagag cggacgtttg 
     4141 gttatcaacg tccgtggtat gaatatgtag ctaagtatga taatgcacac ggcctgttcc 
     4201 gtactgatat gaaaaatttt gttatgcatc gctcattcac tggacttcct caactcggtc 
     4261 agcaattttt gcttgttgac cctaatgctg ttaatcaggt ctttagtgtt acggaatata 
     4321 ccgataagat tttcggttac gtcaagttta atgctactgc acgattacca atcagccgtg 
     4381 ttgcaatacc ccggttagac taagaaaata attttttctt tttttcttcc gacattgcat 
     4441 ctttaaggca tgtgtgtgcg acttgcttca agggttctag tagtaataat tgttaaatat 
     4501 tagaaccttg ttataatatt taatcaatta ttagtgctag gttcattgaa cttgtcgcgc 
     4561 gcacatacct acctttgcaa tatcgtaaga ttaaaaggga aaagtatttt ccctctgcgt 
     4621 gaaacgcaaa tcaatcgcaa ttttattgcg taaagtataa attttaaatt ttacacttat 
     4681 ggctagaaat acaaaacctg attacaaatg tgttgaatgt aattttgatg tacaaaaaga 
     4741 ttttgaaaga actaaaccta acttaggttt aacacctcaa caagtagctg aaatggcaaa 
     4801 acgtggtatt cccgtttctc ctatgaatgt gaattttatt gatgttaatg gtgatgcttc 
     4861 ttggaatata gagcctcaat tccgtcgtga tatggatatg gctaccgctt gggaaatgga 
     4921 aaaagcctcc cagcgtaaag ctcttcaggt tcttcgtcag aagaaatttg gtgataagta 
     4981 tattaatcct caaaataact gattatgcct agtcctgccg ctggcgctgc cgccggcgct 
     5041 gctgctggtt ctgttgttcc aggtatcggt actgctattg gtgctattgg cggagctgct 
     5101 atctccgcca ttggcaactg gtttggaaac aggagtaacc gcaaagcgtc tcgcgaagcc 
     5161 ttcgagcgag aaagtaaatt cgctcgtgaa gaacgtctcg cacaacagca atggattgaa 
     5221 caaatgtatg agaaaaataa ctcttacaat tcacctgctg cccagatgca acgtttgaaa 
     5281 gatgccggat taaatccgga cttgatgtac tcccgtggtg acgtaggaaa tgcaaccgcc 
     5341 ccagaagctc ctgcacaagc tcctacaccg cggtataatg tgatacctac gaatacttac 
     5401 ggacagactg cgcaaattag ctgctgatgc tggattgaaa gctgcgcaag ctcgtttagc 
     5461 aaattccgaa agtaagaaaa cggatactga agaaagtttg cttactgctg attatctgct 
     5521 tcgtaaagct cgtacggaaa gtgatattga gttgaataat tctactattt atgtaaatca 
     5581 tgaactcgga caattgaatc atgctgaagc tgaagtagct gcaaagaaac ttcaggaaat 
     5641 tgatgttgct atgtctgaag ctcgtgaacg tattagtaca atgaaagctc aacaatcaca 
     5701 gattgatgag aatatggttc aattgaaatt tgataggtat ctgcgttcta aggagtttga 
     5761 gctcctttgt aagagaacgt atcaggatat gaaagagagc aattctcgta ttaaccttaa 
     5821 tgctgctgaa gtgcaagaca tgatggctac gcagttggct cgtgtaatga atctgaatgc 
     5881 gtctacttat atgcaaaaga agcaaggtat attggctagt gaacagacta tgacagagct 
     5941 atacaagcaa accggtattg atatctcgaa tcagcatgct aaatttaatt ttgatcaggc 
     6001 taaaaactgg gattcaaccg agcgttttac taacgttgct acaacttgga ttaattccgt 
     6061 ttcgtttgct gtcggtcaat ttgctggtgc tactacttct ttgcaaaaag gtggtttcct 
     6121 cggaaaatct atgtctccta taggattccg ttaatgatta gccgggtgtc ccccggcttt 
     6181 cacgattttt cc 
//
