FEATURES             Location/Qualifiers
     gene            253..528
                     /locus_tag="Alpa_01"
     CDS             253..528
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="VSHGFGRLSKEDIKIMRENMLRSSTSWFCVYINNFRYSIPRYWRTACFTKDEIKCRNDSLIPAILWSIVQQRYRGLSPLNQRLIYYSLLWV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            519..2336
                     /locus_tag="Alpa_02"
     CDS             519..2336
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MGMMFLTRSRNKKSNVNLSHVSPTTLAPGNLIPISFTRIFAGDDLRFKPSAFVQAMPMNAPLVNGFKLCLEYFFVPDRLYNWELLMDNTGVTDDPDKVKFPQISSPAEYSTGTIKFSLNSQSAARGDAARLANSIVQPGSLADYCGFPVGLFPTYDIVSDTDDRNQFCALKLLGVLDIFYHYYVNQQIERFPTASFTPTLNSGSEDERNVDYPVTMLRSFLDFVKRSPNPASAIGEWATSNPNGNPIFGTWSWFCSRASIFQRCLPPYYLESWLATSGYEDSEIKVDLDADGKSISFRNIAAHSHIQRWLDLALAGGSRYSDYINSQFDVSRLKHTTSPLYLGSDRQYLGSNVIYQTTGAGDSSSPLGAFAGQASGGETFRQRSYHFGENGYFVVMASLVPDVIYSRGMDPFNREKTLGDVYVPALDNIAMEPLMVEQVDALPSLLSLQRGTDSVYTLSFRPDKLIKNSALGYVPAWSKVMQSTSRAHGRLTTDLKYWLLNRDYGVDIDQIKNTGVIGVDVLKNLASELQQAYQAGYISFEQMDALVTLFSRIQALPEYTPYVLPNAYNDVFADTSNQAQNFVLTCTFSMSCNREKGKVNTPTTI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_026318620.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2346..2663
                     /locus_tag="Alpa_03"
     CDS             2346..2663
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MFSFKYLNKRMSSRPRSFSPNATTDDELIHGVKPLSDQIRSFRNGGLGLGARPLGDSNYDEDDSQVVDPSSEFGLDRFEKSEEVASQISTRMKKKHDEKLKHAEV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_026318619.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3008..4090
                     /locus_tag="Alpa_04"
     CDS             3008..4090
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MSVTAAIIAGAATAAAAGTNAIAQGKLNRKNRKWQEKMYNKQVADRRADVEAQAQRQKDLAQWAYTNFDSPAAQRAAYAAAGVNPFVEGSSIQPAQVNPGSVQAAQGGDVPGSGPYQMNPMSALQSGASSIIQNAMLDRQMKNADADIALKDAQRIKTLAEAQGQTNENSLFEFARSAAESDALSKRFRLELDKVNAEFAQAFAEADLAQRKALLQEIWSRVKSNLAQAARTDADRLTIDTLRDLQAKSLGAGISLTQTQTSATQAQTDLAKVETDYKRMLTKVEDSKLEPTLKEIQARIDNLDKSSLSLEQRRILDSYETEIRAALANHEKGEMREFLRKVETTGTSLWRLILPTIGGK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 21 and 22 "
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_018697176.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4074..4298)
                     /locus_tag="Alpa_05"
     CDS             complement(4074..4298)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MYYTVLLYTRNGGSAQGKTKKTRSMSGLTLLSGRQLTNTPPDKPEEESNPTNLKDNNKNTKQKNPYRKDTTFLQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 actgccgatc ggctttgtga agcgatctcg ccgcggcggt cgccgcggaa aaggtcgtcc 
       61 gcgccccgga acaaaaacgg tttctttagg gggcaggttc gtgatctttg ggaatcttgt 
      121 gttggtcgtg cttgggttga tcctctcaat tctgatgctg gtgttcgtta tgttctcaag 
      181 tatatgacca aggactgtaa ggctcatcag tatatctcgg atatcgatgc gcgaaagaat 
      241 ggtaggctgt tcgtgtcgca tggctttggc cgtctttcta aggaggatat taaaattatg 
      301 cgtgaaaata tgttgcgtag ttctacgtct tggttttgcg tgtatattaa taattttcgt 
      361 tattcaattc cccgatattg gcgtacagcc tgttttacaa aggatgagat caagtgtcgt 
      421 aatgatagcc ttattccggc tattctttgg tctattgttc agcaaagata tcgaggttta 
      481 tcacctttaa atcaacgtct tatttattat tctttgttat gggtatgatg tttttaaccc 
      541 gaagtaggaa taagaagtcg aatgtgaatc tttctcacgt ttcgcccact actcttgcgc 
      601 cgggtaatct tattccgatt tcgtttacgc ggatcttcgc tggcgatgat cttcgtttta 
      661 agccgtctgc gtttgttcag gctatgccta tgaacgcccc tttggttaat ggtttcaagc 
      721 tttgcttgga atatttcttt gttccggatc gactttataa ctgggaactc cttatggata 
      781 atactggtgt tacggatgat cctgacaaag tgaagtttcc tcagattagt tctcctgcag 
      841 agtatagtac cggtactatt aaattttctt tgaatagcca atctgctgcc agaggtgacg 
      901 ctgctcgttt ggctaattct attgtccagc cgggttcgtt ggctgattac tgtggttttc 
      961 cggttggttt atttccaact tatgatattg tttcagatac ggatgatcgt aatcagtttt 
     1021 gcgctttgaa gcttttgggt gttcttgata ttttctatca ctattatgtg aatcagcaga 
     1081 tcgagcgctt cccaactgct tcgtttactc ctacgcttaa ttccggttct gaggatgagc 
     1141 gaaatgttga ttatcccgta accatgttgc gttccttctt ggattttgtt aagcgttctc 
     1201 caaatccagc tagcgctatt ggtgagtggg ctacttctaa tccgaatggt aatcctattt 
     1261 tcggtacatg gtcatggttt tgttcgcgag cttcgatttt ccagcgttgt cttccgccct 
     1321 actatctcga atcgtggctt gctacttccg gttatgagga ttctgaaatc aaggtagatt 
     1381 tggatgccga cggtaagtcg atttcgttcc gtaatattgc tgctcacagc catattcagc 
     1441 gctggcttga tcttgctttg gcaggtggat ctcgttactc ggactatatt aattctcagt 
     1501 tcgatgtttc gcgccttaag cataccactt ccccgcttta tcttggttct gatcgtcagt 
     1561 atctaggttc gaatgtgatt tatcagacta ccggtgcagg tgattcttcg agtccgcttg 
     1621 gtgcttttgc tggtcaggct tctggtggtg agacttttcg tcagcgttct tatcattttg 
     1681 gcgagaatgg ttattttgtg gttatggctt cgcttgttcc tgatgtaatc tattctcgag 
     1741 gtatggatcc atttaaccgt gaaaagacgc ttggtgatgt ttatgttcct gctttggaca 
     1801 atatcgctat ggagcctctt atggttgagc aggttgatgc tcttccctct ttgctttctc 
     1861 ttcaacgagg tacggattct gtttatactt tgtcttttag gccggataaa ttaatcaaga 
     1921 actctgcttt gggttatgtt cctgcttggt ctaaggtcat gcagagcact tctcgcgcac 
     1981 atggtcgtct tactaccgat cttaagtact ggcttcttaa tcgtgattat ggtgtggata 
     2041 ttgatcagat taagaatacg ggtgttattg gtgtggatgt tctcaagaat ctggcttctg 
     2101 aacttcagca ggcttatcag gctggttata tttcttttga gcagatggat gcattggtta 
     2161 ctttgttctc tcgtattcaa gctttgccgg aatatactcc ttatgttctt ccgaatgcct 
     2221 ataacgatgt ctttgcggac acttcgaatc aggcgcagaa tttcgttctt acttgcactt 
     2281 tttcgatgtc ttgcaatcgt gagaagggta aggttaatac tcctacaact atttaattta 
     2341 cagttatgtt tagctttaag tatcttaaca aacgcatgtc ctcgcgtccg cgttcgtttt 
     2401 ctcctaatgc tactacggat gatgagttga ttcatggtgt taaaccgctt tcggatcaga 
     2461 ttcgctcttt ccgtaatggt ggtcttggcc ttggtgcccg tcctcttggt gattctaatt 
     2521 atgatgagga tgattctcag gttgtcgatc cctcttcgga attcggctta gaccgctttg 
     2581 agaagtctga agaagttgct tctcagatta gtactcgtat gaagaagaag catgatgaga 
     2641 agttgaaaca tgcagaggtt tagttatggc ttattggttg gatctacttc ctcttcggcc 
     2701 agctcttgat tactggatgt tcttccggta ttcgtgattt ttgtggagga atttgcacgg 
     2761 tgattacttc tccgttagtt tcttctccgg cctttcgaaa gtaccgtctt tcgattggcc 
     2821 ggatttctgt tctcgccgag tgatcccgcg ctttaggagc cgatctttga tcggcgaccc 
     2881 cgcggggcgc aggcgcaatt tcatggcaaa aaaggctatt tcccttgcca atatatgcca 
     2941 gatgtggaaa cgggttcttt cccgtggctc tacatcggtt ttttgcaatc attaaatcaa 
     3001 tcaatctatg tccgttactg ccgctattat cgcaggcgct gctacggctg ccgccgctgg 
     3061 tactaatgct attgctcaag gtaaactgaa tcgtaagaat cggaaatggc aggaaaagat 
     3121 gtataacaag caggttgccg atcgtcgtgc tgatgttgag gctcaggctc agcgtcagaa 
     3181 agatttggcc caatgggctt atacgaattt cgactctcct gccgctcagc gtgccgctta 
     3241 cgctgccgct ggtgtcaatc ctttcgttga gggttcttcc attcagcccg ctcaggttaa 
     3301 tcccggatca gttcaggccg ctcaaggtgg agatgttccc ggctctggtc cttaccagat 
     3361 gaatcctatg tccgctttgc agtctggcgc ttcttcaatc atccagaatg ctatgcttga 
     3421 ccgtcagatg aaaaatgctg atgccgatat tgctctcaag gatgctcagc gtattaagac 
     3481 tcttgctgag gctcaaggcc agaccaatga gaattctttg ttcgagtttg cgaggtctgc 
     3541 agcggaatcc gacgctttgt cgaagcgatt ccgcttggag cttgataaag tcaatgcaga 
     3601 attcgctcag gcctttgctg aagctgacct tgcccagcgt aaggcactcc ttcaggaaat 
     3661 ttggtctcgt gttaagagca atcttgctca ggccgcccgt actgatgccg accgcctgac 
     3721 tatcgatacg ctccgcgatc ttcaggccaa gtcccttggt gctgggatct ctcttaccca 
     3781 aactcagact tctgccactc aggcgcagac cgatcttgct aaagttgaaa ctgattataa 
     3841 gcgtatgctt acaaaagttg aggattccaa gctcgagcct actcttaaag aaattcaggc 
     3901 tcgtattgac aatcttgata aatcttcgct ttctttggag cagcgtcgta ttcttgattc 
     3961 ttatgagact gaaattcgtg ctgctcttgc taatcatgaa aaaggtgaga tgcgtgagtt 
     4021 tcttcgcaag gttgagacta ctggcacttc gctttggcgt cttatacttc ctactattgg 
     4081 aggaaagtag tatctttgcg atatggattt ttttgtttgg tatttttgtt attatccttc 
     4141 aggtttgttg gattgctttc ttcttctggt ttatctggag gtgtgtttgt aagttgtctt 
     4201 cccgaaagta gtgtaagacc cgacatggat cgggtctttt ttgttttacc ttgtgcagat 
     4261 ccaccgtttc ttgtatataa tagtactgtg tagtacatag tgccgtttaa aatcagcgcg 
     4321 aagcgcacca tcgggtgact gagggggagc acgaggggga gagttaggga gcccatcgta 
     4381 tgagattgtc tgc 
//
