bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-6_CDS_annotation_glimmer3.pl_2_8

Length=632
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  575615.HMPREF0670_00477                                             41.6    0.61


> 575615.HMPREF0670_00477
Length=541

 Score = 41.6 bits (96),  Expect = 0.61, Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 33/250 (13%)

Query  349  TYQSDIFNNWIQTEWLEGENGINAITAVDTSIGSFTMDTLNLA--KKVYNMLNRIAVS--  404
            T  SD F++ +Q     G  G +A       +   + D LN++  +  + +   +++S  
Sbjct  244  TIGSDSFSSVLQLSDPTGSAGFSA-DGNSAKLNMASPDVLNVSAIRSAFALDKLLSISMR  302

Query  405  -DGTYKSWMETVFSAKYVERTETPIYY-GGMSQEIIFEEVVSTSATGEEP----------  452
               TY   +E  F     E  +  +YY GG    +   +V  TS T              
Sbjct  303  AGKTYAEQIEAHFGVTVSEGRDGQVYYLGGFDSNVQVGDVTQTSGTTNPNVSEVGNAKLA  362

Query  453  --LGTLAGKGRLAPNKKGGKVVIKIDEPSYIIGICSITPRLDYS--QGNNFTMNWETMND  508
              LG + GKG        G++     EP  ++ I S+ P + Y   + + F    +T  D
Sbjct  363  GYLGKITGKGT---GSGYGEIQFDAKEPGVLMCIYSVVPAMQYDCMRLDPFVAK-QTRGD  418

Query  509  LHKPALDMIGYQDLTMEKAAWWTEEHTSDTEFAQKSIGKTVAWVDYMTNYNKNYGNFASG  568
               P  + +G Q +     A+ +     D  +     G    + +Y T ++ N+G FA+G
Sbjct  419  YFIPEFENLGMQPIV---PAFVSLNRAKDNSY-----GWQPRYSEYKTAFDINHGQFANG  470

Query  569  ENENFMTLDR  578
            E  ++ ++ R
Sbjct  471  EPLSYWSIAR  480



Lambda      K        H        a         alpha
   0.315    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1429214176260