bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters



Query= Contig-40_CDS_annotation_glimmer3.pl_2_1

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  585502.HMPREF0645_1835                                              63.2    1e-08


> 585502.HMPREF0645_1835
Length=553

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 100/234 (43%), Gaps = 32/234 (14%)

Query  2    AFQIQKLYEKDARGGSRYIEILKSHFGVTSPDARLQRPEYLGGNRVPININQVVQQSATA  61
            AF + KL     R G  + + +++H+GV  PD+R  R  YLGG    + ++ V Q S T 
Sbjct  304  AFAVDKLLSVTMRAGKTFQDQMRAHYGVEIPDSRDGRVNYLGGFDSDMQVSDVTQTSGTT  363

Query  62   SGETAQ-----GTVTGMSVTTDTHSDFTKSFTEHGFVIGVMVA----RYDHTYQQGLERF  112
            + E        G V G   T            EHG ++ +       +YD T    L+  
Sbjct  364  ATEYKPEAGYLGRVAGKG-TGSGRGRIVFDAKEHGVLMCIYSLVPQIQYDCTR---LDPM  419

Query  113  WSRKDRFDYYWPVFANIGEQAVKNKEIFAQGPGVKDTAGAVID--DQVFGYQEAWADYRY  170
              + DRFDY+ P F N+G Q + +  I         ++    D  + V GYQ  +++Y+ 
Sbjct  420  VDKLDRFDYFTPEFENLGMQPLNSSYI---------SSFCTTDPKNPVLGYQPRYSEYKT  470

Query  171  KPSRVTGEMRSQYAQS--LDVWHLA--DDYSALPMLSDSWIREDKANVDRVLAV  220
                  G    Q+AQS  L  W ++    ++  P L  +  + D   ++ +  V
Sbjct  471  ALDVNHG----QFAQSDALSSWSVSRFRRWTTFPQLEIADFKIDPGCLNSIFPV  520



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364563974780