bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-38_CDS_annotation_glimmer3.pl_2_5 Length=125 Score E Sequences producing significant alignments: (Bits) Value 469590.BSCG_01610 50.4 4e-06 > 469590.BSCG_01610 Length=154 Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (6%) Query 11 PIESLRFY---TDEDGCVHMNSDVNLLMNAERI--RNQIGEENYLNIVRSIQPSRSPYKQ 65 P++ F D D + ++SD+ +L N +R+ +Q Y N + +P + + Sbjct 34 PVDQFLFQEVSVDGDTSIRLSSDIYMLFNQQRLDKLSQTSLLEYFNNISVTEPRFNELRS 93 Query 66 KLDDDALISTLKSRYLQSPAEIDAW 90 KL D+ LIS +KSR++QS +E+ AW Sbjct 94 KLGDEQLISFVKSRFIQSKSELMAW 118 Lambda K H a alpha 0.311 0.125 0.339 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 127803418040