bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-31_CDS_annotation_glimmer3.pl_2_3 Length=149 Score E Sequences producing significant alignments: (Bits) Value 483215.BACFIN_08701 37.7 0.59 > 483215.BACFIN_08701 Length=675 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 14/115 (12%) Query 9 TTLIAML-RTISIVLYLFPLFIKPKNRFARALDSLISLDMRRLEKESKKLRTKGLLYLME 67 T+LI M R +++L+ + +N AR +D L S + R+E + Sbjct 264 TSLIEMFDRKFRHIVFLYDMDDTGRNESARRMDELSSFHVLRMELPISGAKGD------- 316 Query 68 CLIFRIKNLSDIFPAGRISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYDSLPETS 122 K++SD F +G+ + D+ + +M+ Y ++SC Y++ PE+S Sbjct 317 ------KDISDYFASGKSAADFQVLITSMLEKLYSQTMMLLKSCEMDYNNPPESS 365 Lambda K H a alpha 0.325 0.141 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 127521903410