bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-2_CDS_annotation_glimmer3.pl_2_6 Length=63 Score E Sequences producing significant alignments: (Bits) Value 6669.DappuP99476 32.3 3.3 > 6669.DappuP99476 Length=173 Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 24/41 (59%), Gaps = 0/41 (0%) Query 20 SVQLPGVPPKQSFVDTSSSLAETVASILDSTPHAIILVQAS 60 S+ +P VPPK S +DT SS A+I S P II +Q S Sbjct 67 SLAIPHVPPKLSKMDTKSSPVRFEATIQWSWPLWIICIQVS 107 Lambda K H a alpha 0.312 0.127 0.332 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 128574704720