bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-27_CDS_annotation_glimmer3.pl_2_4 Length=50 Score E Sequences producing significant alignments: (Bits) Value 467200.SSRG_00523 31.6 2.4 > 467200.SSRG_00523 Length=114 Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 23/35 (66%), Gaps = 0/35 (0%) Query 14 SEVSSKVVISLDRLDSFLSRGYTVEFVQPIRVLSD 48 + V ++V +DR+D +SRG++V V P R +++ Sbjct 38 AAVGAEVAFEVDRVDEAMSRGWSVLAVGPARAVTE 72 Lambda K H a alpha 0.323 0.140 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 128802422700