bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-26_CDS_annotation_glimmer3.pl_2_6 Length=120 Score E Sequences producing significant alignments: (Bits) Value 379066.GAU_1571 39.3 0.060 > 379066.GAU_1571 Length=247 Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 49/103 (48%), Gaps = 5/103 (5%) Query 21 RAYRDRGGIGDRSASLIELIG-TERVSRRDYGYEGTFYVTEDGETYDNEYMNTHNPIRTG 79 R+ R+R +G R+ + LIG + R DY + G F + D + + T TG Sbjct 80 RSSRERQQVGGRTQEIQRLIGRSVRAMLDDYRF-GEFTIKVDCDVLQADG-GTRTAAITG 137 Query 80 --VNFYEVSNWRYNEGKEMYEPVIRRIVMIKIRFVEYQLSLDL 120 V + NW + G+ + PV RR+ I + V+ ++ LDL Sbjct 138 ACVAVQDAFNWMVSTGRIIASPVKRRVAAISVGMVDGEVRLDL 180 Lambda K H a alpha 0.317 0.137 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126008063940