bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-26_CDS_annotation_glimmer3.pl_2_4 Length=101 Score E Sequences producing significant alignments: (Bits) Value 296591.Bpro_2918 35.8 0.85 > 296591.Bpro_2918 Length=508 Score = 35.8 bits (81), Expect = 0.85, Method: Composition-based stats. Identities = 20/84 (24%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query 9 LLAESGKKEEEIKNVNLEIEERKVSKNGIFVLIRNKNNKWVITMCGSLVNAKEFDTKEEA 68 LLA +++ N+ + +R++++ GI + +R +W+ T+ G + +EE Sbjct 34 LLAPVRATHKQLDNIYFDTPQRRLARAGIALRLRRDGRRWLQTVKGGSNSQAGLHQREEI 93 Query 69 EEHIAKK--EWEDILTAAFIFILR 90 E +A EW+ + AF +L+ Sbjct 94 EFSVAGPALEWKPLAGTAFEPVLK 117 Lambda K H a alpha 0.311 0.129 0.348 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126210615890