bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-25_CDS_annotation_glimmer3.pl_2_4 Length=57 Score E Sequences producing significant alignments: (Bits) Value 5762.XP_002675041.1 32.7 4.8 > 5762.XP_002675041.1 Length=676 Score = 32.7 bits (73), Expect = 4.8, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 23/36 (64%), Gaps = 2/36 (6%) Query 20 KRRKILY-EMYLNL-NRQLVSLDGVDQPSLFDEYDR 53 +RR +Y + Y+ L R L+S DG PSLF EYD+ Sbjct 487 RRRASVYRKKYVQLFERHLISKDGTIDPSLFQEYDQ 522 Lambda K H a alpha 0.320 0.143 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 125990947530