bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters



Query= Contig-24_CDS_annotation_glimmer3.pl_2_1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  3694.POPTR_0002s06630.1                                             36.6    1.4


> 3694.POPTR_0002s06630.1
Length=129

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (47%), Gaps = 6/83 (7%)

Query  30   RRALKLFIKLFIKSLFMEKTPFYRNKAFWTLVTSIIAAFAAYFTVSCSYTQKVFRHGVHH  89
            RRA  LF  L+I  LF+E+    R    W     +++A   +F +  S T+    + + H
Sbjct  48   RRAQDLFCALWIPDLFIERV---RGDGSWKGQKKVVSARKLWFEILNSQTETGTPYMLFH  104

Query  90   DTVKVE---SVIKSRNLSCLTKN  109
            DTV  +    V K+R +  L  N
Sbjct  105  DTVVTDLQLQVGKNRAMCWLRPN  127



Lambda      K        H        a         alpha
   0.322    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316648875480