bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-21_CDS_annotation_glimmer3.pl_2_6 Length=238 Score E Sequences producing significant alignments: (Bits) Value 910310.HMPREF9402_0015 40.4 0.21 > 910310.HMPREF9402_0015 Length=309 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 39/115 (34%), Positives = 56/115 (49%), Gaps = 19/115 (17%) Query 17 ATLTFSEESLKKLEYDEKEPNKAPQKAISLFRKRWWKKYKEPLKHWLITELGHDNTKRIH 76 TLTF EE + LE EK ++ I+ RK KK E K+ + E G T+R H Sbjct 109 CTLTFKEEP-EDLERAEKLSQNFFRR-INRLRK---KKGLENAKYVYVIEEGTFGTERFH 163 Query 77 LHGIIWTELTEEQFEKEWGYGWIFFGYEVNERTINY--------IIKYITKRDEA 123 LH II L++++ E++WG G RT+NY + KY+ K +E Sbjct 164 LHLIIDNGLSKDEIEEKWGLGATTL------RTLNYYKEENFIGVCKYMMKDEET 212 Lambda K H a alpha 0.316 0.135 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 319753276220