bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-21_CDS_annotation_glimmer3.pl_2_3 Length=101 Score E Sequences producing significant alignments: (Bits) Value 476272.RUMHYD_00803 35.4 1.1 > 476272.RUMHYD_00803 Length=705 Score = 35.4 bits (80), Expect = 1.1, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (49%), Gaps = 0/90 (0%) Query 12 ESGKEEEEIKDVNLEIEEREVSENGPFVLIRNKKNKWVITTCGALVNGKEFDTKEDAEKH 71 E KE+ +I+ N E+ + +G + I + W +T+ G K F+ KE+A+K+ Sbjct 371 EDAKEKADIQVKNAGGEKIYPNSDGSYSFIEDGTYNWTVTSEGYWTESKTFEVKEEADKN 430 Query 72 LAKKEWDDILTAALIFFTHVKNQMENTQKE 101 + +E ++ + F V ++ +N E Sbjct 431 VEFREALEMSPTYPVKFEFVSDKPQNQTIE 460 Lambda K H a alpha 0.311 0.130 0.361 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126210615890