bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-17_CDS_annotation_glimmer3.pl_2_4

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  585502.HMPREF0645_1835                                              66.6    9e-09


> 585502.HMPREF0645_1835
Length=553

 Score = 66.6 bits (161),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 69/239 (29%), Positives = 110/239 (46%), Gaps = 22/239 (9%)

Query  377  DVSSGSLTMDTLNLAKKVYDMLNRIAVSGGTYQDWIQTVYTNDYIERSETPV-YEGGFSS  435
            D S G  ++ +L  A  V  +L+    +G T+QD ++  Y  +  +  +  V Y GGF S
Sbjct  290  DSSEGDFSVSSLRAAFAVDKLLSVTMRAGKTFQDQMRAHYGVEIPDSRDGRVNYLGGFDS  349

Query  436  EIIFQEVISNS---ATENEP----LGTLAGRGQNTGMKGGTVKIKIDEPSYIIGIVSITP  488
            ++   +V   S   ATE +P    LG +AG+G  TG   G +     E   ++ I S+ P
Sbjct  350  DMQVSDVTQTSGTTATEYKPEAGYLGRVAGKG--TGSGRGRIVFDAKEHGVLMCIYSLVP  407

Query  489  RIDYSQGNRFDVDLDTLD--DLHKPALDAIGFQDLTTNKMAWWDETITADGEKQLKSVGK  546
            +I Y    R D  +D LD  D   P  + +G Q L ++ ++ +    T D +  +  +G 
Sbjct  408  QIQY-DCTRLDPMVDKLDRFDYFTPEFENLGMQPLNSSYISSF---CTTDPKNPV--LGY  461

Query  547  QPAWLDYMTNYNKVFGNFAIKD--SEMFMTLNRNYEMDENKSIADLTTYIDPEKYNYVF  603
            QP + +Y T  +   G FA  D  S   ++  R +       IAD    IDP   N +F
Sbjct  462  QPRYSEYKTALDVNHGQFAQSDALSSWSVSRFRRWTTFPQLEIADFK--IDPGCLNSIF  518



Lambda      K        H        a         alpha
   0.314    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1438036485990