bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-14_CDS_annotation_glimmer3.pl_2_4 Length=270 Score E Sequences producing significant alignments: (Bits) Value 910310.HMPREF9402_0015 38.1 1.3 > 910310.HMPREF9402_0015 Length=309 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/118 (35%), Positives = 62/118 (53%), Gaps = 15/118 (13%) Query 12 YFMTLTFSEEK--LEEYKKLCNSEDPNTIATKAMRLMLERCRRKLKHSIKHWFITELGHN 69 Y+ TLTF EE LE +KL + + RL R ++ L+++ K+ ++ E G Sbjct 107 YWCTLTFKEEPEDLERAEKLSQN-----FFRRINRL---RKKKGLENA-KYVYVIEEGTF 157 Query 70 GTERMHLHGLV-WGIGMDKLVEEKWQNGIVFTGTFVNEKTINYI--TKYITKTDEYHK 124 GTER HLH ++ G+ D+ +EEKW G T K N+I KY+ K +E +K Sbjct 158 GTERFHLHLIIDNGLSKDE-IEEKWGLGATTLRTLNYYKEENFIGVCKYMMKDEETYK 214 Lambda K H a alpha 0.317 0.133 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 408928407440