bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters



Query= Contig-12_CDS_annotation_glimmer3.pl_2_1

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  483216.BACEGG_02723                                                 94.4    6e-19


> 483216.BACEGG_02723
Length=368

 Score = 94.4 bits (233),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 62/168 (37%), Positives = 82/168 (49%), Gaps = 45/168 (27%)

Query  4    LGSITGGLLGLGSSAVQNSQNRQNVRETNQMNYKINQMNNQFNERMAIQQ----------  53
            +  I G  +G G+S +  +         NQ N +I QMNN FNE+M  +Q          
Sbjct  6    MTGIVGSAIGAGTSLIGGAST---THMQNQANKEIAQMNNAFNEKMFDKQIAYNKEMYQT  62

Query  54   -----------------------RNWQENMWNKENAYNTASAQRQRLEEAGLNPYLMMNG  90
                                   + +Q  MWNK+N YN  SAQR RLE AGLNPY+MMNG
Sbjct  63   QLGDQWKFYDDQKANAWKLYEDNKAYQTEMWNKQNEYNDPSAQRARLEAAGLNPYMMMNG  122

Query  91   GSAGVAQS-AGNGATAASSGNAVMQ--------PFQADYSGIGSSIGN  129
            GSAGVA S +G   +A S+G+   Q        P+ ADYSG+   +G+
Sbjct  123  GSAGVAGSVSGTQGSAPSAGSPSAQGVQPPTATPYSADYSGVMQGLGH  170



Lambda      K        H        a         alpha
   0.311    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675393053440