bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-8_CDS_annotation_glimmer3.pl_2_9
Length=239
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094324|emb|CDL65715.1| unnamed protein product 62.0 4e-08
gi|640753844|emb|CDO19151.1| Putative uncharacterized protein 35.4 5.9
gi|524988825|ref|XP_005042320.1| PREDICTED: leucine-rich repeat ... 37.4 9.1
>gi|575094324|emb|CDL65715.1| unnamed protein product [uncultured bacterium]
Length=370
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/200 (25%), Positives = 105/200 (53%), Gaps = 16/200 (8%)
Query 11 SESKKTDTEESLLTADYLLRKARTESDIELNNSTIYVNHELGQLNHAEAEVAAKKLQEID 70
+++ K + E + L D ++ A +++ I+L+ + QL A+AE +++ ++
Sbjct 145 ADTSKKEGEVTSLNIDNFVKAASSDNAIKLSGVEV-------QLTKAQAEYTSEQKTKLI 197
Query 71 VAMSEARERISTMKAQQSQ-------IDENMVQLKFDRYLRSKEFELLCKRTYQDMKESN 123
+++ E ++ +KAQ S+ +D + V + L ++ F+L C+ + ++E++
Sbjct 198 SEINDINEHVNLLKAQISETWARTSNLDSSTVLNRTTAILNNRRFDLECEEFARRVRETD 257
Query 124 SRINLNAAEVQDMMATQLARVMNLNASTYMQKKQGILASEQ-TMTELYKQTGIDISNQHA 182
+++NL+ AE + ++ T A+V N++A T +++ L Q T E Y + IDI A
Sbjct 258 AKVNLSEAEAKSILVTMYAKVNNIDADTALKQANIRLTDAQKTQVEHYTNS-IDIHRDAA 316
Query 183 KFNFDQAKNWDSTERFTNVA 202
F Q + +D +R +VA
Sbjct 317 VFKLQQDQKYDDAQRIVSVA 336
>gi|640753844|emb|CDO19151.1| Putative uncharacterized protein [Streptococcus gallolyticus]
Length=91
Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/85 (26%), Positives = 47/85 (55%), Gaps = 10/85 (12%)
Query 61 VAAKKLQEIDVAMSEARERISTMKAQQSQIDENM----------VQLKFDRYLRSKEFEL 110
+A K L +ID+A+ EA++++++++ ++ +EN+ +QLK D+ L + +
Sbjct 1 MAKKDLSKIDLALEEAKKKVASLENERKLAEENLQKTIGKLYVQIQLKKDKTLSYEAIQK 60
Query 111 LCKRTYQDMKESNSRINLNAAEVQD 135
K+ D+K + I L+ + QD
Sbjct 61 ALKKELTDLKSAEKEIRLDDKKTQD 85
>gi|524988825|ref|XP_005042320.1| PREDICTED: leucine-rich repeat and coiled-coil domain-containing
protein 1 [Ficedula albicollis]
Length=943
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 47/170 (28%), Positives = 81/170 (48%), Gaps = 17/170 (10%)
Query 31 KARTESDIE-LNNSTIYVNHELGQLNHAEAEVAAKKLQEIDVAMSEAR-ERISTMKAQQS 88
KAR ++DI+ L T + +EL Q + EAE K LQ ++ +S+ +R+ A+
Sbjct 482 KARLQADIQQLKGETERLTNELKQAKNKEAEYQ-KTLQALEETLSKMEMQRLQQRAAEMK 540
Query 89 QIDE---------NMVQLKFDRYLRSKE-----FELLCKRTYQDMKESNSRINLNAAEVQ 134
Q+ E VQL + KE ELL R + KE SR+ LN E Q
Sbjct 541 QVQEAELKSSANAREVQLLRISVRQQKEKVKHLHELLVLREQEQRKELGSRVALNGPEFQ 600
Query 135 DMMATQLARVMNLNASTYMQKKQGILASEQTMTELYKQTGIDISNQHAKF 184
D ++ ++A+ +A + ++ I S+Q EL ++ + ++ + +F
Sbjct 601 DALSKEVAKEEQRHAHHVRELQEKINISDQKYKELEQEFHLALTIEAKRF 650
Lambda K H a alpha
0.312 0.123 0.328 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1013250983040