bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-36_CDS_annotation_glimmer3.pl_2_3

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|496332127|ref|WP_009041305.1|  bacteriophage integrase             32.7    5.9


>gi|496332127|ref|WP_009041305.1| bacteriophage integrase [Bacteroides sp. D22]
 gi|298269342|gb|EFI10954.1| bacteriophage integrase [Bacteroides sp. D22]
Length=123

 Score = 32.7 bits (73),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 0/35 (0%)

Query  18   IPENYVHYYKKYLYEIEFFRFKKGVSVDSRYCDVP  52
            +   Y H Y+ Y +  EF  +K GVS+ SR C  P
Sbjct  74   VKTTYTHLYRAYQHLKEFLGYKYGVSIRSRACLFP  108



Lambda      K        H        a         alpha
   0.321    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435507561048