bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-25_CDS_annotation_glimmer3.pl_2_5

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|657703191|ref|WP_029502002.1|  hypothetical protein                37.7    0.78
gi|446497026|ref|WP_000574880.1|  hypothetical protein                35.4    6.6


>gi|657703191|ref|WP_029502002.1| hypothetical protein [Lachnoclostridium phytofermentans]
Length=366

 Score = 37.7 bits (86),  Expect = 0.78, Method: Compositional matrix adjust.
 Identities = 17/37 (46%), Positives = 23/37 (62%), Gaps = 0/37 (0%)

Query  1    LQSCLERFIPQEDTTDEIQDNYDEYLDDLDGFTEYLD  37
            L  CL+R+IP+E  +D I D YDE  D  D   E++D
Sbjct  122  LNQCLKRWIPKEKLSDHITDFYDEAKDSADEIAEFID  158


>gi|446497026|ref|WP_000574880.1| hypothetical protein, partial [Streptococcus pneumoniae]
 gi|332203289|gb|EGJ17356.1| cell wall binding repeat family protein [Streptococcus pneumoniae 
GA47368]
Length=424

 Score = 35.4 bits (80),  Expect = 6.6, Method: Composition-based stats.
 Identities = 29/94 (31%), Positives = 44/94 (47%), Gaps = 4/94 (4%)

Query  1    LQSCLERFIPQEDTTDEIQDNYDEYLDDLDGFTEYLDK--ADMYREKFNLSDELSAEEIF  58
            L+  L+   P+  T DE+    +E   +LD   + L    AD+ +E  NL   L   +  
Sbjct  40   LEKLLDSLDPEGKTQDELDKEAEE--AELDKKADELQNKVADLEKEISNLEILLGGADSE  97

Query  59   DHVSEQAKKLKTRLEEIEKARKESQAKKHEPVPD  92
            D  +    KL T+  E+EK +KE  A  +E  PD
Sbjct  98   DDTAALQNKLATKKAELEKTQKELDAALNELGPD  131



Lambda      K        H        a         alpha
   0.309    0.129    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438877747044