bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-16_CDS_annotation_glimmer3.pl_2_8

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|669354414|gb|KFD84218.1|  AAA domain protein                       36.6    0.75


>gi|669354414|gb|KFD84218.1| AAA domain protein [Vibrio cholerae]
Length=294

 Score = 36.6 bits (83),  Expect = 0.75, Method: Composition-based stats.
 Identities = 15/49 (31%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query  10   YVNNEGKIIEREIPGMNTYKIAKKFAKILNDPEETKLVCVVESWKLYPN  58
            ++NN+  +I++ IP  NT  I +++   LN P+ + +  ++ SW+ Y N
Sbjct  62   FMNNKWHVIDKNIPIFNT--IFEQYVDPLNAPDVSSIKNIISSWRFYDN  108



Lambda      K        H        a         alpha
   0.309    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435507561048