bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-16_CDS_annotation_glimmer3.pl_2_4

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|489873909|ref|WP_003777429.1|  hypothetical protein                35.8    0.49
gi|503495081|ref|WP_013729742.1|  DNA helicase                        34.3    7.0
gi|493753292|ref|WP_006702196.1|  glycine cleavage system protein H   32.7    7.8


>gi|489873909|ref|WP_003777429.1| hypothetical protein [Alloiococcus otitis]
 gi|425730934|gb|EKU93764.1| hypothetical protein HMPREF9698_00712 [Alloiococcus otitis ATCC 
51267]
Length=110

 Score = 35.8 bits (81),  Expect = 0.49, Method: Compositional matrix adjust.
 Identities = 22/72 (31%), Positives = 41/72 (57%), Gaps = 2/72 (3%)

Query  8   FKIRLLPESEEYVITIG--SHLATEEKFKSEKAAQMQINKTNWDLVSALVYALKEADEWA  65
           + I + PE ++ V T+G    +  ++  + +  A ++ +KT  D++S L   +    E A
Sbjct  17  YVISMTPEMQDDVGTVGFVEFVDKDDIKEGDTLANIEASKTVLDVLSPLAGRIVARHEEA  76

Query  66  EKNPELINQTKE  77
           EKNPEL+N +K+
Sbjct  77  EKNPELLNSSKQ  88


>gi|503495081|ref|WP_013729742.1| DNA helicase [Mycoplasma mycoides]
 gi|331703646|ref|YP_004400333.1| Replicative DNA helicase DnaC [Mycoplasma mycoides subsp. capri 
LC str. 95010]
 gi|328802201|emb|CBW54355.1| Replicative DNA helicase DnaC [Mycoplasma mycoides subsp. capri 
LC str. 95010]
Length=437

 Score = 34.3 bits (77),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 17/49 (35%), Positives = 27/49 (55%), Gaps = 0/49 (0%)

Query  26   HLATEEKFKSEKAAQMQINKTNWDLVSALVYALKEADEWAEKNPELINQ  74
            +LA    FK  K A   +  +N  L++ L+  + + D  A KNP++INQ
Sbjct  215  NLALNAAFKEHKVALFSLEMSNEQLIARLLSRISKVDSLAFKNPKIINQ  263


>gi|493753292|ref|WP_006702196.1| glycine cleavage system protein H [Facklamia ignava]
 gi|405579715|gb|EKB53810.1| hypothetical protein HMPREF9707_01563 [Facklamia ignava CCUG 
37419]
Length=110

 Score = 32.7 bits (73),  Expect = 7.8, Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (3%)

Query  10  IRLLPESEEYVITIGSHLATEEK-FKSEKA-AQMQINKTNWDLVSALVYALKEADEWAEK  67
           I + PE ++ + T+G    TEEK  K E A A ++ +KT  +++S +   + E +E A  
Sbjct  19  ISMTPELQDDIGTVGFVEFTEEKQLKKEDAIAHIEASKTVLEIISPVTGTVVEINEAAID  78

Query  68  NPELINQTKEA  78
           NP+++N    A
Sbjct  79  NPKMLNSADTA  89



Lambda      K        H        a         alpha
   0.307    0.123    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434005500390