bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-15_CDS_annotation_glimmer3.pl_2_1
Length=410
Score E
Sequences producing significant alignments: (Bits) Value
gi|490418711|ref|WP_004291034.1| hypothetical protein 42.7 0.34
gi|499929829|ref|WP_011610563.1| serine phosphatase 41.2 1.3
gi|649555290|gb|KDS61827.1| hypothetical protein M095_3809 40.4 1.7
gi|492501772|ref|WP_005867312.1| hypothetical protein 39.7 2.9
gi|575094319|emb|CDL65706.1| unnamed protein product 40.0 3.0
gi|565841291|ref|WP_023924572.1| hypothetical protein 39.3 4.7
gi|519001387|ref|WP_020157262.1| anti-sigma factor 37.4 5.7
gi|489994664|ref|WP_003897721.1| DNA polymerase LigD, polymerase... 38.9 5.8
gi|571919725|gb|ETR76253.1| hemolysin secretion protein D 38.5 9.5
>gi|490418711|ref|WP_004291034.1| hypothetical protein [Bacteroides eggerthii]
gi|217986638|gb|EEC52972.1| hypothetical protein BACEGG_02723 [Bacteroides eggerthii DSM
20697]
Length=368
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/83 (40%), Positives = 40/83 (48%), Gaps = 18/83 (22%)
Query 28 KMNKKSIKYNKWalqeqqrfqseqaqlGRDWSEEMMSKANQWNL---------EQWNREN 78
KM K I YNK + Q QLG W KAN W L E WN++N
Sbjct 47 KMFDKQIAYNK---------EMYQTQLGDQWKFYDDQKANAWKLYEDNKAYQTEMWNKQN 97
Query 79 EYNLPVNRKARLLAAQINPALAM 101
EYN P ++ARL AA +NP + M
Sbjct 98 EYNDPSAQRARLEAAGLNPYMMM 120
>gi|499929829|ref|WP_011610563.1| serine phosphatase [Trichodesmium erythraeum]
gi|113474582|ref|YP_720643.1| serine phosphatase [Trichodesmium erythraeum IMS101]
gi|110165630|gb|ABG50170.1| serine phosphatase [Trichodesmium erythraeum IMS101]
Length=474
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 14/168 (8%)
Query 223 YLDAGQQLSLFLKIGELATMKTQRELLSAQTRKAIAEEIEVSARARGLKISNYIAEQT-- 280
+ GQ+ K E+AT R+L++ T A +E+ + A + ++SNY+
Sbjct 99 HCQEGQKCQDIRKALEIAT----RQLIAETTLLAELQEVSIQAASLDYQVSNYLGNDVQL 154
Query 281 -AERLIIATNEENRYRGIHARSSAAWTPVRDFYKTSQMSADLKASEVAN-----IMAEFE 334
+++ +E R AWTP R K ++ AD A +AN + E E
Sbjct 155 FGTSILVKNSERGRLYVFSHDPEYAWTPTRQ--KLIRLVADQTAVAIANDELSSSLREKE 212
Query 335 RYTKDTPGNRWIQKNIVPVSSALGPLLDAAAMFTVAGKLGKSVNIFKP 382
R ++ IQ ++P P + AA A ++G F P
Sbjct 213 RLDREVEIGAEIQLQLLPPKCPEIPGVTLAARCKTANRVGGDYYDFIP 260
>gi|649555290|gb|KDS61827.1| hypothetical protein M095_3809 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649557306|gb|KDS63785.1| hypothetical protein M095_3404 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649559158|gb|KDS65545.1| hypothetical protein M096_4689 [Parabacteroides distasonis str.
3999B T(B) 6]
gi|649560567|gb|KDS66875.1| hypothetical protein M095_2448 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649561016|gb|KDS67303.1| hypothetical protein M095_2410 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649562727|gb|KDS68911.1| hypothetical protein M096_3341 [Parabacteroides distasonis str.
3999B T(B) 6]
Length=288
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
Query 58 WSEEMMSKANQWNLEQWNRENEYNLPVNRKARLLAAQINPAL 99
W ++ KA Q +L+ WN +NEYN P + AR+ AA +NP L
Sbjct 45 WQQQENEKAYQRSLKMWNLQNEYNSPTQQMARIRAAGLNPNL 86
>gi|492501772|ref|WP_005867312.1| hypothetical protein [Parabacteroides distasonis]
gi|409230405|gb|EKN23269.1| hypothetical protein HMPREF1059_03254 [Parabacteroides distasonis
CL09T03C24]
Length=288
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (62%), Gaps = 0/42 (0%)
Query 58 WSEEMMSKANQWNLEQWNRENEYNLPVNRKARLLAAQINPAL 99
W ++ KA Q +L WN +NEYN P + AR+ AA +NP L
Sbjct 45 WQQQENEKAYQRSLNMWNLQNEYNSPTQQMARIRAAGLNPNL 86
>gi|575094319|emb|CDL65706.1| unnamed protein product [uncultured bacterium]
Length=396
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Query 61 EMMSKANQWNLEQWNRENEYNLPVNRKARLLAAQINPALAM 101
E+ + N++N WN +NEYN P ++ARL AA +NP L M
Sbjct 65 EIADQNNKFNERMWNLQNEYNRPDMQRARLEAAGLNPYLMM 105
>gi|565841291|ref|WP_023924572.1| hypothetical protein [Prevotella nigrescens]
gi|564729909|gb|ETD29853.1| hypothetical protein HMPREF1173_00035 [Prevotella nigrescens
CC14M]
Length=396
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Query 61 EMMSKANQWNLEQWNRENEYNLPVNRKARLLAAQINPALAM 101
+MM N++N + +++NEY LP+N++ R A INP A+
Sbjct 47 QMMQYQNEFNQKMLDKQNEYALPINQRKRFEDAGINPYFAL 87
>gi|519001387|ref|WP_020157262.1| anti-sigma factor [Methylobacter marinus]
Length=141
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/63 (35%), Positives = 34/63 (54%), Gaps = 3/63 (5%)
Query 173 LKATYGDR---AYRLSLGKTEAEIDNIRASTAKSYADSALVNLQAKEKEILNKYLDAGQQ 229
L+ GDR AY L+L TEA I+ I+ + K+ D+ + +Q +E ++ K D GQ
Sbjct 33 LETFEGDREALAYHLNLVLTEATINAIKHANYKNTEDTVRITIQIQEDAVIIKVYDHGQG 92
Query 230 LSL 232
L
Sbjct 93 FDL 95
>gi|489994664|ref|WP_003897721.1| DNA polymerase LigD, polymerase domain protein [Mycobacterium
smegmatis]
gi|440624092|gb|ELQ85959.1| DNA polymerase LigD, polymerase domain protein [Mycobacterium
smegmatis MKD8]
Length=349
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/147 (30%), Positives = 67/147 (46%), Gaps = 24/147 (16%)
Query 226 AGQQLSLFLKIGELATMKTQRELLSAQTRKAIAEEIEVSARARGLKISNYIAEQTAERLI 285
G+ + +FL+I K Q + + + R IA EV RA +++ E+ ERL
Sbjct 176 GGRGVHVFLRI------KPQWDFIEVR-RAGIALAREVERRAPDAVTTSWWKEERGERLF 228
Query 286 IATNEENRYRGIHARSSAAWTPVRDFYKTSQMSADLKASEVANIMAEFERYTKDT-P--- 341
I N+ R R + S TP+ + +S L E+ N A+ + YT +T P
Sbjct 229 IDYNQNARDRTFASAYSVRKTPI------ATVSMPLSWDELRN--ADPDDYTMNTVPDLL 280
Query 342 ---GNRWIQKNIVPVSSALGPLLDAAA 365
G+ W +I V +LGPLLD A
Sbjct 281 AGRGDPW--ADIDSVQQSLGPLLDLVA 305
>gi|571919725|gb|ETR76253.1| hemolysin secretion protein D [Afipia sp. P52-10]
Length=413
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (51%), Gaps = 13/122 (11%)
Query 186 LGKTEAEIDNIRA-----STAKSYADSALVNLQAKEKEILNKYLDAGQQLSLFLKIGELA 240
+GK+EAEIDN RA S+A YA A +Q K +Y++AG +F+ +G++
Sbjct 206 IGKSEAEIDNFRATGIVSSSATVYAPIAGTVVQRKAGP--GQYINAGSTDPVFI-VGDVG 262
Query 241 TMKTQRELLSAQTRKAIAEEIEVSARARGLKISNYIAEQTAERLIIATNEENRYRGIHAR 300
+ L A R+A A +IEV R +S+ + A+ +ATN + R + R
Sbjct 263 HV-----WLVAYVREADAPKIEVGQTIRFSVLSDASRVREAKLSYVATNLDPTTRRLLVR 317
Query 301 SS 302
++
Sbjct 318 AT 319
Lambda K H a alpha
0.312 0.127 0.361 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2655021004740