bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_4
Length=64
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Human_feces_C_031_Microviridae_AG0434_hypothetical.prote... 23.1 0.17
Gokush_Bourget_052_Microviridae_AG0191_putative.VP2 20.4 1.7
Gokush_gi|9629151|ref|NP_044320.1|_hypothetical_protein_chp1p09... 20.0 2.9
Alpavirinae_Human_feces_C_029_Microviridae_AG0109_putative.VP1 20.0 3.3
Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1 19.6 4.1
Alpavirinae_Human_feces_A_047_Microviridae_AG0311_putative.VP1 19.2 5.5
Gokush_Human_gut_21_019_Microviridae_AG0377_putative.VP2 18.9 7.5
> Gokush_Human_feces_C_031_Microviridae_AG0434_hypothetical.protein.BACEGG.02723
Length=206
Score = 23.1 bits (48), Expect = 0.17, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 13/23 (57%), Gaps = 0/23 (0%)
Query 6 IYWETPKGDEITTIEEAENLKKA 28
+ W KG EI + ENLK+A
Sbjct 126 LMWSQTKGQEIANKIQEENLKQA 148
> Gokush_Bourget_052_Microviridae_AG0191_putative.VP2
Length=253
Score = 20.4 bits (41), Expect = 1.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 0/25 (0%)
Query 18 TIEEAENLKKALRQVSYFEKKTGYE 42
TI+E NLK + Q + K G E
Sbjct 142 TIQEVSNLKNSNDQTTAIIKNLGEE 166
> Gokush_gi|9629151|ref|NP_044320.1|_hypothetical_protein_chp1p09_[Chlamydia_phage_1]
Length=399
Score = 20.0 bits (40), Expect = 2.9, Method: Composition-based stats.
Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 0/20 (0%)
Query 16 ITTIEEAENLKKALRQVSYF 35
++ ++EA + L+QVSY
Sbjct 71 VSNVDEAFRFTEQLKQVSYL 90
> Alpavirinae_Human_feces_C_029_Microviridae_AG0109_putative.VP1
Length=640
Score = 20.0 bits (40), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (55%), Gaps = 0/22 (0%)
Query 35 FEKKTGYEIVSIEIIKNGKEEE 56
FE T EIV E+I N E+
Sbjct 426 FEGGTSQEIVFQEVISNSATEQ 447
> Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1
Length=651
Score = 19.6 bits (39), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/22 (41%), Positives = 12/22 (55%), Gaps = 0/22 (0%)
Query 35 FEKKTGYEIVSIEIIKNGKEEE 56
FE T EIV E++ N E+
Sbjct 438 FEGGTSQEIVFQEVVSNSATED 459
> Alpavirinae_Human_feces_A_047_Microviridae_AG0311_putative.VP1
Length=637
Score = 19.2 bits (38), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/22 (41%), Positives = 12/22 (55%), Gaps = 0/22 (0%)
Query 35 FEKKTGYEIVSIEIIKNGKEEE 56
FE T EI+ E+I N E+
Sbjct 423 FEGGTSQEIIFQEVISNSATEQ 444
> Gokush_Human_gut_21_019_Microviridae_AG0377_putative.VP2
Length=242
Score = 18.9 bits (37), Expect = 7.5, Method: Composition-based stats.
Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 1/15 (7%)
Query 29 LRQVSYFEKKTGYEI 43
LR+ +Y EK+ GYE+
Sbjct 141 LREQTY-EKRLGYEL 154
Lambda K H a alpha
0.310 0.131 0.353 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3692164