bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-5_CDS_annotation_glimmer3.pl_2_5

Length=57
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_C_016_Microviridae_AG0274_putative.VP1      23.1    0.19
  Alpavirinae_CF7ML_001_Microviridae_AG0307_putative.VP4              18.5    8.5


> Alpavirinae_Human_feces_C_016_Microviridae_AG0274_putative.VP1
Length=641

 Score = 23.1 bits (48),  Expect = 0.19, Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (48%), Gaps = 6/44 (14%)

Query  8    FYYADSDYRHFSVEAS------SFSDAEKTANAFALRVGAIIVG  45
            F YA  D R+ +   +      +FSDA  T+N+F     A I G
Sbjct  268  FLYALDDVRNITRTGTGCELFKTFSDALPTSNSFVAMACAGIQG  311


> Alpavirinae_CF7ML_001_Microviridae_AG0307_putative.VP4
Length=593

 Score = 18.5 bits (36),  Expect = 8.5, Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 0/24 (0%)

Query  14   DYRHFSVEASSFSDAEKTANAFAL  37
            DYR+ + +    S+  K AN+  L
Sbjct  566  DYRNRAYDNLKLSNKSKVANSAVL  589



Lambda      K        H        a         alpha
   0.323    0.134    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3661448