bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-40_CDS_annotation_glimmer3.pl_2_3
Length=55
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_A_016_Microviridae_AG001_putative.VP1 21.2 0.65
Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4 19.6 2.4
Gokush_JCVI_001_Microviridae_AG025_putative.VP1 18.9 5.4
Gokush_Bourget_248_Microviridae_AG0251_putative.VP1 18.9 5.6
Gokush_Human_feces_A_013_Microviridae_AG009_putative.VP1 18.5 7.5
Pichovirinae_Pavin_723_Microviridae_AG0326_hypothetical.protein... 18.1 9.1
Gokush_gi|77020115|ref|YP_338238.1|_putative_major_coat_protein... 18.1 9.7
Gokush_gi|17402851|ref|NP_510872.1|_hypothetical_protein_PhiCPG... 18.1 9.9
> Alpavirinae_Human_feces_A_016_Microviridae_AG001_putative.VP1
Length=657
Score = 21.2 bits (43), Expect = 0.65, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (55%), Gaps = 2/31 (6%)
Query 2 VYLIARHLEQPFTVLFTQNKGFQRMIAGQEI 32
VY R+L++P T +F G +MI E+
Sbjct 435 VYTAGRYLDRPETPVF--QGGMSQMIEFDEV 463
> Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4
Length=539
Score = 19.6 bits (39), Expect = 2.4, Method: Composition-based stats.
Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 0/10 (0%)
Query 1 VVYLIARHLE 10
V YLI RHLE
Sbjct 363 VYYLIRRHLE 372
> Gokush_JCVI_001_Microviridae_AG025_putative.VP1
Length=560
Score = 18.9 bits (37), Expect = 5.4, Method: Composition-based stats.
Identities = 7/12 (58%), Positives = 9/12 (75%), Gaps = 0/12 (0%)
Query 33 TFFEWGYRIPIH 44
T F+ GY IPI+
Sbjct 46 TTFDSGYLIPIY 57
> Gokush_Bourget_248_Microviridae_AG0251_putative.VP1
Length=546
Score = 18.9 bits (37), Expect = 5.6, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 9/18 (50%), Gaps = 0/18 (0%)
Query 6 ARHLEQPFTVLFTQNKGF 23
A HL Q FT T N F
Sbjct 481 AWHLAQKFTTTPTLNNTF 498
> Gokush_Human_feces_A_013_Microviridae_AG009_putative.VP1
Length=587
Score = 18.5 bits (36), Expect = 7.5, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 18/37 (49%), Gaps = 0/37 (0%)
Query 18 TQNKGFQRMIAGQEITFFEWGYRIPIHEISVKNLKPY 54
T +G R+ + ++ F W I E ++KN + Y
Sbjct 445 TYQQGLDRLWSRKDKFDFYWPVFANIGEQAIKNKELY 481
> Pichovirinae_Pavin_723_Microviridae_AG0326_hypothetical.protein.BACEGG.02723
Length=266
Score = 18.1 bits (35), Expect = 9.1, Method: Composition-based stats.
Identities = 6/15 (40%), Positives = 10/15 (67%), Gaps = 0/15 (0%)
Query 18 TQNKGFQRMIAGQEI 32
TQN+ +Q + Q+I
Sbjct 196 TQNRYYQNLTTPQQI 210
> Gokush_gi|77020115|ref|YP_338238.1|_putative_major_coat_protein_[Chlamydia_phage_4]
Length=554
Score = 18.1 bits (35), Expect = 9.7, Method: Composition-based stats.
Identities = 7/11 (64%), Positives = 8/11 (73%), Gaps = 0/11 (0%)
Query 33 TFFEWGYRIPI 43
T F+ GY IPI
Sbjct 36 TTFDAGYLIPI 46
> Gokush_gi|17402851|ref|NP_510872.1|_hypothetical_protein_PhiCPG1p2_[Guinea_pig_Chlamydia_phage]
Length=553
Score = 18.1 bits (35), Expect = 9.9, Method: Composition-based stats.
Identities = 7/11 (64%), Positives = 8/11 (73%), Gaps = 0/11 (0%)
Query 33 TFFEWGYRIPI 43
T F+ GY IPI
Sbjct 36 TTFDAGYLIPI 46
Lambda K H a alpha
0.329 0.145 0.452 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3693648