bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-3_CDS_annotation_glimmer3.pl_2_2

Length=71
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initia...  21.6    1.0
  Alpavirinae_Human_feces_B_020_Microviridae_AG0349_putative.VP4      21.2    1.2
  Alpavirinae_Human_feces_C_029_Microviridae_AG0109_putative.VP1      21.2    1.5
  Alpavirinae_Human_gut_31_037_Microviridae_AG0300_putative.VP4       19.6    4.1
  Alpavirinae_Human_feces_E_011_Microviridae_AG0385_putative.VP4      18.9    9.9


> Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initiation_protein_[Bdellovibrio_phage_phiMH2K]
Length=315

 Score = 21.6 bits (44),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 14/26 (54%), Gaps = 0/26 (0%)

Query  21   GSQSNARAYFRRWIEKNLPVYYHESD  46
            GSQ     Y++ W +KN P  + E D
Sbjct  230  GSQGPIPRYYQDWYKKNHPEKWMEYD  255


 Score = 19.6 bits (39),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 10/24 (42%), Positives = 12/24 (50%), Gaps = 5/24 (21%)

Query  24   SNARAYFRRWIEKNLPVYYHESDF  47
            S   A  ++WIEK     YHE  F
Sbjct  202  SKKHAIGKKWIEK-----YHEQTF  220


> Alpavirinae_Human_feces_B_020_Microviridae_AG0349_putative.VP4
Length=332

 Score = 21.2 bits (43),  Expect = 1.2, Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (45%), Gaps = 0/29 (0%)

Query  19   YAGSQSNARAYFRRWIEKNLPVYYHESDF  47
            Y   ++N     R   + NLP+YY    F
Sbjct  206  YTKGKTNETYRLRNGAKINLPIYYRNQLF  234


> Alpavirinae_Human_feces_C_029_Microviridae_AG0109_putative.VP1
Length=640

 Score = 21.2 bits (43),  Expect = 1.5, Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query  18   VYAGSQSNARAYFRRWIEKNLPVYYHESDF  47
            ++ GS+ N+R  +RRW   ++  +  ++DF
Sbjct  233  IFIGSE-NSR--YRRWSGSDIGTWTEQNDF  259


> Alpavirinae_Human_gut_31_037_Microviridae_AG0300_putative.VP4
Length=304

 Score = 19.6 bits (39),  Expect = 4.1, Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 0/29 (0%)

Query  14   SVLNVYAGSQSNARAYFRRWIEKNLPVYY  42
            S LN +   ++      R   + NLP+YY
Sbjct  201  SELNRFREGKTTETYRLRNGTKLNLPIYY  229


> Alpavirinae_Human_feces_E_011_Microviridae_AG0385_putative.VP4
Length=611

 Score = 18.9 bits (37),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 6/9 (67%), Positives = 7/9 (78%), Gaps = 0/9 (0%)

Query  39   PVYYHESDF  47
            P YYH+ DF
Sbjct  110  PEYYHDRDF  118



Lambda      K        H        a         alpha
   0.329    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3715980