bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-25_CDS_annotation_glimmer3.pl_2_5
Length=120
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_A_016_Microviridae_AG006_putative.VP2 20.0 8.7
Alpavirinae_Human_feces_B_023_Microviridae_AG0145_putative.VP1 20.0 9.8
> Alpavirinae_Human_feces_A_016_Microviridae_AG006_putative.VP2
Length=367
Score = 20.0 bits (40), Expect = 8.7, Method: Composition-based stats.
Identities = 15/49 (31%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query 33 TEYLDKADMYREKFNLSDELS--------AEEIFDHVSEQAKKLKTRLE 73
TEYLDK R + ++D+LS E + D + QA K++ ++
Sbjct 231 TEYLDKTQQQRIQM-VTDQLSLIQKQGLKEEAVIDLTNAQASKVRKEID 278
> Alpavirinae_Human_feces_B_023_Microviridae_AG0145_putative.VP1
Length=668
Score = 20.0 bits (40), Expect = 9.8, Method: Composition-based stats.
Identities = 17/74 (23%), Positives = 28/74 (38%), Gaps = 0/74 (0%)
Query 9 IPQEDTTDEIQDNYDEYLDDLDGFTEYLDKADMYREKFNLSDELSAEEIFDHVSEQAKKL 68
IP I + E L DLD E + R + NL+ +L F ++
Sbjct 298 IPTSYKIKNITNILTENLSDLDQLREDILAKGNERFEMNLTTKLGGSINFTYIQHILGGN 357
Query 69 KTRLEEIEKARKES 82
++ E+ K + S
Sbjct 358 ESSYEKATKYNRSS 371
Lambda K H a alpha
0.309 0.129 0.348 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6924476